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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Diploid oat-Diploid Oat, AFLP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Avena-Yu-C
Start
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Diploid oat - Diploid Oat, AFLP [ View Map Set Info ]
Map Name: Avena-Yu-C
Map Start: 0
Map Stop: 384.1
Features by Type:
49 locus
49 Total

Map Features

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Items 1 to 25 of 49.       of 2 | Next
Diploid oat - Diploid Oat, AFLP - Avena-Yu-C
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
E1M6-1a locus 0 No other positions
E16M9-10a locus 7.5 No other positions
E11M10-4a locus 10.1 No other positions
E1M3-6a locus 12.3 No other positions
E4M11-8a locus 13.5 No other positions
E1M4-1b locus 14.2 No other positions
E16M9-7b locus 15.5 No other positions
E3M5-8a locus 16.9 No other positions
E16M11-6a locus 19.7 No other positions
E1M3-7b locus 24.6 No other positions
E1M4-3a locus 29.5 No other positions
E1M3-8a locus 33.1 No other positions
E11M10-1a locus 37.8 No other positions
E1M3-5b locus 44.8 No other positions
E1M3-3a locus 51.9 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5-30 E1M3-3a locus 108 () Automated name-based View Maps
E12M12-9b locus 73.7 No other positions
E2M9-6a locus 78.8 No other positions
E4M4-9b locus 98 No other positions
Bare-E2-2a locus 103.1 No other positions
E9M4-4a locus 109.8 No other positions
E13M15-4b locus 118.3 No other positions
E14M11-3b locus 119 No other positions
E2M4-9b locus 120.3 No other positions
Bare-M8-9a locus 133.3 No other positions
Bare-E12-4a locus 155.8 No other positions

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