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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Diploid oat-Diploid Oat, AFLP
(Reference Set)
Min.
Correspondences
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Maps Avena-Yu-A
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Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Diploid oat - Diploid Oat, AFLP [ View Map Set Info ]
Map Name: Avena-Yu-A
Map Start: 0
Map Stop: 575.8
Features by Type:
94 locus
94 Total

Map Features

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Items 1 to 25 of 94.       of 4 | Next
Diploid oat - Diploid Oat, AFLP - Avena-Yu-A
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
E5M11-2a locus 0 No other positions
E1M6-7a locus 9.2 No other positions
E5M6-2a locus 12.3 No other positions
E16M9-1a locus 13.3 No other positions
E12M12-10b locus 13.3 No other positions
E16M11-4a locus 19.6 No other positions
E16M9-6a locus 24.4 No other positions
E3M2-9b locus 27.2 No other positions
E11M10-10b locus 27.2 No other positions
E5M11-5a locus 29.8 No other positions
E15M11-2b locus 50 No other positions
E13M3-3b locus 52.4 No other positions
E4M4-1b locus 55.7 No other positions
Bare-E14-7a locus 58.8 No other positions
Bare-E14-6a locus 58.8 No other positions
E5M6-8b locus 64.9 No other positions
E13M3-2b locus 73.4 No other positions
Xcdo395b locus 75.1 Oat - Oat, KxO - Oat-KxO-3 Xcdo395b locus 38.2 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_12 Xcdo395b locus 19 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xcdo395b locus 56.5 () Automated name-based View Maps
E11M5-9a locus 75.1 No other positions
E1M3-9b locus 81.2 No other positions
E13M15-1b locus 83.5 No other positions
E5M11-4b locus 88.3 No other positions
E3M5-4b locus 104.5 No other positions
E3M5-14b locus 117 No other positions
E6M14-1 locus 131.6 No other positions

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