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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sugarcane-Saccharum, CU/CIBR
(Reference Set)
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Correspondences
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Maps Saccharum-CU/CIBR-6
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Sugarcane - Saccharum, CU/CIBR [ View Map Set Info ]
Map Name: Saccharum-CU/CIBR-6
Map Start: 0
Map Stop: 21.5
Features by Type:
5 locus
5 Total

Map Features

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Items 1 to 5 of 5.
Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-6
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
SG012d locus 15.7 Sugarcane - Saccharum, Cornell - Saccharum-6 SG012d locus 3.4 () Automated name-based View Maps
SG322a locus 14.3 Sugarcane - Saccharum, Cornell - Saccharum-6 SG322a locus 1.8 () Automated name-based View Maps
CD0202A locus 21.5 No other positions
CSB010B locus 12.3 No other positions
G5.4s locus 0 No other positions

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