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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sugarcane-Saccharum, CU/CIBR
(Reference Set)
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Maps Saccharum-CU/CIBR-34
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
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Image Type: PNG JPEG GIF SVG *
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Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Sugarcane - Saccharum, CU/CIBR [ View Map Set Info ]
Map Name: Saccharum-CU/CIBR-34
Map Start: 0
Map Stop: 86.5
Features by Type:
8 locus
8 Total

Map Features

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Items 1 to 8 of 8.
Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-34
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
UMC130c locus 43.7 Sugarcane - Saccharum, Cornell - Saccharum-34 UMC130c locus 5.8 () Automated name-based View Maps
BC1707A locus 39.5 No other positions
C10.5s locus 22.5 No other positions
CSB002A locus 50.4 No other positions
H9.1s locus 30.2 No other positions
I19.2s locus 63.1 No other positions
O12.1s locus 0 No other positions
P2.1s locus 86.5 No other positions

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