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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sugarcane-Saccharum, CU/CIBR
(Reference Set)
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Maps Saccharum-CU/CIBR-28
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
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Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
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Image Type: PNG JPEG GIF SVG *
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Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Sugarcane - Saccharum, CU/CIBR [ View Map Set Info ]
Map Name: Saccharum-CU/CIBR-28
Map Start: 0
Map Stop: 146.1
Features by Type:
13 locus
13 Total

Map Features

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Items 1 to 13 of 13.
Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-28
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
UMC047b locus 55 Sugarcane - Saccharum, Cornell - Saccharum-28 UMC047b locus 11.8 () Automated name-based View Maps
A7.3s locus 30.7 No other positions
CSR085B locus 45.7 No other positions
CSR133A locus 69.5 No other positions
F4.5s locus 140.3 No other positions
G5.3s locus 146.1 No other positions
H11.1s locus 130.4 No other positions
I8.2s locus 118.7 No other positions
J17.3s locus 94.7 No other positions
J17.4s locus 108.5 No other positions
K10.4s locus 24.9 No other positions
R2.1s locus 36.4 No other positions
R19.1s locus 0 No other positions

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