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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sugarcane-Saccharum, CU/CIBR
(Reference Set)
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Maps Saccharum-CU/CIBR-25
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Sugarcane - Saccharum, CU/CIBR [ View Map Set Info ]
Map Name: Saccharum-CU/CIBR-25
Map Start: 0
Map Stop: 109.6
Features by Type:
12 locus
12 Total

Map Features

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Items 1 to 12 of 12.
Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-25
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
SG224a locus 0 Sugarcane - Saccharum, Cornell - Saccharum-25 SG224a locus 60.1 () Automated name-based View Maps
UMC049a locus 53.1 Sugarcane - Saccharum, Cornell - Saccharum-25 UMC049a locus 18.8 () Automated name-based View Maps
A1.5s locus 90.6 No other positions
B1.1s locus 86.1 No other positions
BC1095A locus 109.6 No other positions
CSR063A locus 41.7 No other positions
CSR133B locus 37.5 No other positions
G17.3s locus 72.6 No other positions
I10.2s locus 27.5 No other positions
J13.1s locus 14.5 No other positions
L9.1s locus 79 No other positions
U3.1s locus 66.2 No other positions

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