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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sugarcane-Saccharum, CU/CIBR
(Reference Set)
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Maps Saccharum-CU/CIBR-24
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Sugarcane - Saccharum, CU/CIBR [ View Map Set Info ]
Map Name: Saccharum-CU/CIBR-24
Map Start: 0
Map Stop: 88.8
Features by Type:
12 locus
12 Total

Map Features

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Items 1 to 12 of 12.
Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-24
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
UMC015b locus 66.9 Sugarcane - Saccharum, Cornell - Saccharum-24 UMC015b locus 4.5 () Automated name-based View Maps
UMC031a locus 62.7 Sugarcane - Saccharum, Cornell - Saccharum-24 UMC031a locus 0 () Automated name-based View Maps
A10.3s locus 29.6 No other positions
A10.4s locus 18.9 No other positions
A15.2s locus 45.1 No other positions
CSC041C locus 0 No other positions
CSR146B locus 65.5 No other positions
CSR160B locus 66.9 No other positions
F4.2s locus 10.4 No other positions
H4.2s locus 83.9 No other positions
H13.2s locus 74.6 No other positions
H14.6s locus 88.8 No other positions

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