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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Sugarcane-Saccharum, CU/CIBR
(Reference Set)
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Maps Saccharum-CU/CIBR-2
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Feature Types:
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Correspondence		 Always Display
locus
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Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
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BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
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Image Type: PNG JPEG GIF SVG *
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Size of Dot Plot Pixels: 1
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Sugarcane - Saccharum, CU/CIBR [ View Map Set Info ]
Map Name: Saccharum-CU/CIBR-2
Map Start: 0
Map Stop: 169.1
Features by Type:
16 locus
16 Total

Map Features

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Items 1 to 16 of 16.
Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-2
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
SG026a locus 60.7 Sugarcane - Saccharum, Cornell - Saccharum-2 SG026a locus 44.3 () Automated name-based View Maps
SG099d locus 112.6 Sugarcane - Saccharum, Cornell - Saccharum-2 SG099d locus 65.5 () Automated name-based View Maps
SG442b locus 36.4 Sugarcane - Saccharum, Cornell - Saccharum-2 SG442b locus 18.4 () Automated name-based View Maps
B2.2s locus 13.8 No other positions
C9.4s locus 18 No other positions
CD0665A locus 50.6 No other positions
CD1345A locus 169.1 No other positions
CSC052C locus 22.2 No other positions
CSC056B locus 0 No other positions
CSR-154A locus 82.6 No other positions
CSR096A locus 26.4 No other positions
CSR128B locus 43.9 No other positions
I19.5s locus 127.8 No other positions
O16.3s locus 149.8 No other positions
Q8.2s locus 65.2 No other positions
R16.1s locus 154.1 No other positions

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