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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sugarcane-Saccharum, CU/CIBR
(Reference Set)
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Correspondences
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Maps Saccharum-CU/CIBR-16
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Sugarcane - Saccharum, CU/CIBR [ View Map Set Info ]
Map Name: Saccharum-CU/CIBR-16
Map Start: 0
Map Stop: 87
Features by Type:
10 locus
10 Total

Map Features

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Items 1 to 10 of 10.
Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-16
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
SG442a locus 19.7 Sugarcane - Saccharum, Cornell - Saccharum-16 SG442a locus 15.7 () Automated name-based View Maps
A12.4a locus 72 No other positions
B2.1s locus 74.8 No other positions
C9.3s locus 87 No other positions
CD1011A locus 59 No other positions
CSC030A locus 0 No other positions
CSC052D locus 44.7 No other positions
CSC056A locus 33.3 No other positions
CSR096B locus 41.9 No other positions
CSR153A locus 47.5 No other positions

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