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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sugarcane-Saccharum, CU/CIBR
(Reference Set)
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Maps Saccharum-CU/CIBR-1
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Feature Types:
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Correspondence		 Always Display
locus
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Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
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BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Sugarcane - Saccharum, CU/CIBR [ View Map Set Info ]
Map Name: Saccharum-CU/CIBR-1
Map Start: 0
Map Stop: 117.5
Features by Type:
14 locus
14 Total

Map Features

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Items 1 to 14 of 14.
Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-1
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
SG012a locus 7 Sugarcane - Saccharum, Cornell - Saccharum-1 SG012a locus 118.1 () Automated name-based View Maps
SG168b locus 59 Sugarcane - Saccharum, Cornell - Saccharum-1 SG168b locus 52.1 () Automated name-based View Maps
SG302b locus 19.7 Sugarcane - Saccharum, Cornell - Saccharum-1 SG302b locus 100.3 () Automated name-based View Maps
UMC027a locus 15.5 Sugarcane - Saccharum, Cornell - Saccharum-1 UMC027a locus 110.3 () Automated name-based View Maps
CD0089A locus 16.9 No other positions
CD0202B locus 0 No other positions
CSB031A locus 108.5 No other positions
CSB031B locus 109.9 No other positions
CSB032B locus 2.1 No other positions
CSR012B locus 76.5 No other positions
CSR065B locus 117.5 No other positions
CSR120A locus 101.4 No other positions
CSR153C locus 4.2 No other positions
K16.3s locus 26.8 No other positions

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