*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-KxO-RGA
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps RGA-2013_KO32
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-KxO-RGA [ View Map Set Info ]
Map Name: RGA-2013_KO32
Map Start: 0 cM
Map Stop: 38 cM
Features by Type:
13 locus
13 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 13 of 13.
Oat - Oat-2013-KxO-RGA - RGA-2013_KO32
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sad1 locus 38 Oat - Oat-2001-KxO - Oat-2001-KxO_25-32 SAD1 locus 17.5 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_12 SAD1 locus 17.4 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-32 SAD1 locus 37.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg03 SAD1 locus 72.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 SAD1 locus 72.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_32 SAD1 locus 40 (cM) Automated name-based View Maps
RsaI/PK4R1a_2 locus 17 No other positions
bcd1338a locus 21 Oat - Oat-2004-TxM - Oat-2004-TxM_4_16 bcd1338a locus 10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 BCD1338A locus 109.8 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_32 BCD1338A locus 25 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_25-32 BCD1338A locus 31.75 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-32 bcd1338a locus 21.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg03 BCD1338A locus 109.8 () Automated name-based View Maps
cdo517 locus 31 Oat - Oat-1997-64Lines - Oat-1997-64Lines_32 cdo517 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN29 cdo517 locus 10.1 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_24 cdo517 locus 9 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_32 CDO517 locus 34 (cM) Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_24 cdo517 locus 8.5 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-32 cdo517 locus 30.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 CDO517 locus 23.2 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_25-32 CDO517 locus 23.75 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL3 - Oat-2003-OxM-QTL3_24 cdo517 locus 8.5 (cM) Automated name-based View Maps
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-29 cdo517 locus 10.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 CDO517 locus 23.2 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xcdo517 locus 59.8 () Automated name-based View Maps
RsaI/PK3Fb_1 locus 17 No other positions
HaeIII/PK3Fb_1 locus 17 No other positions
aco181 locus 17 Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 ACO181 locus 123.9 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-32 aco181 locus 17.5 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_32 ACO181 locus 22 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_25-32 ACO181 locus 33.75 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg03 ACO181 locus 123.9 () Automated name-based View Maps
RsaI/NBS1_4 locus 13 Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN1 RsaI/NBS1_4 locus 5.9 (cM) Automated name-based View Maps
bcd1632a locus 13 Oat - Oat-2009-KxO - Oat-2009-KxO_32 BCD1632A locus 12 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 BCD1632A locus 83.9 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_25-32 BCD1632A locus 37.5 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 BCD1632A locus 83.9 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-32 bcd1632a locus 12.7 () Automated name-based View Maps
b9c locus 5 No other positions
HaeIII/NBS2_1 locus 5 No other positions
cdo395a locus 5 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_6 cdo395a locus 94 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_12 CDO395A locus 74.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg03 CDO395A locus 141.3 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_6 cdo395a locus 94 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_25-32 CDO395A locus 43.75 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-32 CDO395A locus 5.1 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_13 cdo395a locus 94 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 CDO395A locus 141.3 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_20 cdo395a locus 94 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_32 CDO395A locus 5 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_27 cdo395a locus 94 (cM) Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-2 CDO395A locus 68.1 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_20 cdo395a locus 94 (cM) Automated name-based View Maps
Oat - Oat-2004-TxM - Oat-2004-TxM_29 cdo395a locus 0 () Automated name-based View Maps
re6m6_2cx locus 0 Oat - Oat-2009-KxO - Oat-2009-KxO_32 re6m6_2cx locus 0 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-32 re6m6_2cx locus 0 () Automated name-based View Maps

GrainGenes is a product of the US Department of Agriculture.