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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-KxO-RGA
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Maps RGA-2013_KO30
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
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Show Labels: None Landmarks All
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Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-KxO-RGA [ View Map Set Info ]
Map Name: RGA-2013_KO30
Map Start: 0 cM
Map Stop: 25 cM
Features by Type:
12 locus
12 Total

Map Features

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Items 1 to 12 of 12.
Oat - Oat-2013-KxO-RGA - RGA-2013_KO30
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
aa12.1075 locus 25 Oat - Oat-2016-KxO - Oat-2016-KxO_35 aa12.1075 locus 15.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 aa12.1075 locus 104.5 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-30 aa12.1075 locus 24.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 aa12.1075 locus 104.5 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_5_30 AA12.1075 locus 109 (cM) Automated name-based View Maps
AluI/PK4R1b_13 locus 15 No other positions
AluI/PK4R1a_4 locus 15 Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN3 AluI/PK4R1a_4 locus 48.5 (cM) Automated name-based View Maps
RsaI/PK1Fa_11 locus 15 No other positions
HaeIII/NBS1_9 locus 15 No other positions
umn407 locus 15 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 UMN407 locus 104.5 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_5_30 UMN407 locus 114 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_30 UMN407 locus 23.5 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-30 umn407 locus 15.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 UMN407 locus 104.5 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_35 UMN407 locus 2 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-30 Xumn407 locus 13.2 () Automated name-based View Maps
AluI/PK1Fa_1 locus 9 No other positions
HaeIII/NBS6_6 locus 9 No other positions
HaeIII/NBS6_3 locus 9 No other positions
umn5697 locus 9 Oat - Oat-2009-KxO - Oat-2009-KxO_5_30 UMN5697 locus 107 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 UMN5697 locus 100.2 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-30 umn5697 locus 9.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 UMN5697 locus 100.2 () Automated name-based View Maps
RsaIPK4R1a_12 locus 0 No other positions
e4m6_17x locus 0 Oat - Oat-2009-KxO - Oat-2009-KxO_5_30 e4m6_17x locus 107 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-30 e4m6_17x locus 0 () Automated name-based View Maps

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