*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-KxO-RGA
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps RGA-2013_KO2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-KxO-RGA [ View Map Set Info ]
Map Name: RGA-2013_KO2
Map Start: 0 cM
Map Stop: 39 cM
Features by Type:
19 locus
19 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 19 of 19.
Oat - Oat-2013-KxO-RGA - RGA-2013_KO2
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
aco193crv locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 ACO193CRV locus 149.2 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_2 ACO193CRV locus 12 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 ACO193CRV locus 149.2 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-2 aco193crv locus 0 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO2 aco193crv locus 0 (cM) Automated name-based View Maps
RsaI/PK3Fb_5 locus 0 No other positions
cdo1466 locus 5 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_19 cdo1466 locus 41 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-2 cdo1466 locus 5.28 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_2 CDO1466 locus 17 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_2 CDO1466 locus 5 (cM) Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-9 cdo1466 locus 12.3 () Automated name-based View Maps
Oat - Oat-1997-64Lines - Oat-1997-64Lines_2 cdo1466 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 CDO1466 locus 147.3 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xcdo1466 locus 30.2 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_2 CDO1466 locus 22.43 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 CDO1466 locus 139.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 CDO1466 locus 139.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 CDO1466 locus 147.3 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO2 cdo1466 locus 1.88 (cM) Automated name-based View Maps
113a locus 9 Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswH 113a locus 25 (cM) Automated name-based View Maps
Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN22 113a locus 36.3 (cM) Automated name-based View Maps
HaeIII/NBS1_10 locus 9 No other positions
HaeIII/PK1Fa_4 locus 9 No other positions
HaeIII/PK4R1a_5 locus 9 No other positions
RsaI/PK4R1a_4 locus 9 Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN3 RsaI/PK4R1a_4 locus 55.3 (cM) Automated name-based View Maps
RsaI/PK4R1a_6 locus 9 No other positions
AluI/PK4R1b_1 locus 9 Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN29 AluI/PK4R1b_1 locus 10.8 (cM) Automated name-based View Maps
bcd1851c locus 12 Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_2 BCD1851C locus 39.52 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 BCD1851C locus 130.4 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-2 bcd1851c locus 12.2 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_2 BCD1851C locus 25 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO2 bcd1851c locus 9.18 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 BCD1851C locus 130.4 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_2 BCD1851C locus 10 (cM) Automated name-based View Maps
RP4a81e locus 12 No other positions
cdo1158 locus 16 Oat - Oat, KxO, 2003 - Oat-KxO/2003-2 CDO1158 locus 16.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 CDO1158 locus 129.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 CDO1158 locus 129.6 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_6 cdo1158 locus 15.5 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO2 cdo1158 locus 12.71 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xcdo1158 locus 76.3 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_2 CDO1158 locus 16.25 (cM) Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_6 cdo1158 locus 15.5 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_20 cdo1158 locus 20 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_6 cdo1158 locus 20 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_20 cdo1158 locus 20 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_27 cdo1158 locus 20 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_2 CDO1158 locus 30 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_13 cdo1158 locus 20 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_6 cdo1158 locus 20 (cM) Automated name-based View Maps
RsaI/NBS5A_8 locus 16 No other positions
bcd1829a locus 24 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 BCD1829A locus 68.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 BCD1829A locus 98.6 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-24 bcd1829a locus 0 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_2 BCD1829A locus 46 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_2 BCD1829A locus 25 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-2 bcd1829a locus 24.1 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_9 BCD1829A locus 60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 BCD1829A locus 68.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 BCD1829A locus 98.6 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_17 bcd1829a locus 36 (cM) Automated name-based View Maps
Oat - Oat-2004-TxM - Oat-2004-TxM_21 bcd1829a locus 40 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO2 bcd1829a locus 21.06 (cM) Automated name-based View Maps
cdo1342 locus 28 Oat - Oat-2001-KxO - Oat-2001-KxO_2 CDO1342 locus 25 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_2 CDO1342 locus 48 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 CDO1342 locus 97.7 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-2 Xcdo1342 locus 26 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_2 CDO1342 locus 77.7 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 CDO1342 locus 97.7 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO2 cdo1342 locus 24.24 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-2 cdo1342 locus 27.8 () Automated name-based View Maps
cdo539a locus 36 Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO2 cdo539a locus 32.82 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_2 CDO539A locus 60 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 CDO539A locus 81.4 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-10 CDO539a locus 134.65 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-2 CDO539a locus 36.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 CDO539A locus 81.4 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_2 CDO539A locus 47.5 (cM) Automated name-based View Maps
II2.3b locus 36 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 II2.3b locus 81.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 II2.3b locus 81.4 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_2 II2.3b locus 60 (cM) Automated name-based View Maps
umn5846 locus 39 Oat - Oat-2001-KxO - Oat-2001-KxO_2 UMN5846 locus 47.5 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-2 umn5846 locus 38.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 UMN5846 locus 82.4 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_2 UMN5846 locus 51 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO2 umn5846 locus 36.35 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 UMN5846 locus 82.4 () Automated name-based View Maps

GrainGenes is a product of the US Department of Agriculture.