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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, MxN, genetic 2005
(Reference Set)
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Maps Oat-MxN_2005-4
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, MxN, genetic 2005 [ View Map Set Info ]
Map Name: Oat-MxN_2005-4
Map Start: 0
Map Stop: 60.9
Features by Type:
4 locus
4 Total

Map Features

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Items 1 to 4 of 4.
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-4
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
p42m58m15 locus 0 Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN4 p42m58m15 locus 0 (cM) Automated name-based View Maps
p40m58m2 locus 27.5 Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN4 p40m58m2 locus 27.5 (cM) Automated name-based View Maps
aco193y locus 60.9 Oat - Oat-2004-TxM - Oat-2004-TxM_10 aco193y locus 0 () Automated name-based View Maps
p40m50m16 locus 60.9 Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN4 p40m50m16 locus 60.9 (cM) Automated name-based View Maps

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