*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2019-TX07CSxHidalgo
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2019-TxH_Mrg08
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2019-TX07CSxHidalgo [ View Map Set Info ]
Map Name: Oat-2019-TxH_Mrg08
Map Start: 0 cM
Map Stop: 141.3 cM
Features by Type:
290 locus
290 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 290.       of 12 | Next
Oat - Oat-2019-TX07CSxHidalgo - Oat-2019-TxH_Mrg08
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
avgbs2_161693.1 locus 0 No other positions
avgbs2_13971.1 locus 6.6 No other positions
avgbs_6K_7372.1 locus 6.6 No other positions
avgbs2_105747.2 locus 9.2 No other positions
avgbs_219910.1 locus 9.2 No other positions
avgbs_cluster_34535.1 locus 10.6 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_cluster_34535.1.61 locus 31.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_cluster_34535.1 locus 31.9 () Automated name-based View Maps
avgbs2_53978.1 locus 13.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs2_53978.1 locus 31.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs2_53978.1.20 locus 31.6 () Automated name-based View Maps
avgbs_cluster_10424.1 locus 13.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_cluster_10424.1 locus 31.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_cluster_10424.1.20 locus 31.6 () Automated name-based View Maps
avgbs_cluster_8771.1 locus 15.9 No other positions
avgbs2_142660.1 locus 15.9 No other positions
avgbs2_46825.1 locus 15.9 No other positions
avgbs_cluster_29842.1 locus 15.9 No other positions
avgbs2_100282.2 locus 20.5 No other positions
avgbs_cluster_39110.1 locus 20.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_cluster_39110.1.20 locus 35.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_cluster_39110.1 locus 35.1 () Automated name-based View Maps
avgbs_cluster_21260.1 locus 20.5 No other positions
avgbs2_35071.1 locus 27.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs2_35071.1 locus 39.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs2_35071.1.51 locus 39.1 () Automated name-based View Maps
avgbs_cluster_23060.1 locus 28.6 No other positions
avgbs2_125042.1 locus 30.4 No other positions
avgbs2_112794.1 locus 32.6 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs2_112794.1.16 locus 62.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs2_112794.1 locus 62.4 () Automated name-based View Maps
avgbs_5616.1 locus 32.6 No other positions
avgbs_cluster_24157.1 locus 32.6 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_cluster_24157.1.16 locus 62.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_cluster_24157.1 locus 62.4 () Automated name-based View Maps
avgbs_22880.1 locus 32.8 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_2As avgbs_22880.1 locus 67 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_22880.1.19 locus 44.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_22880.1 locus 44.3 () Automated name-based View Maps
avgbs2_164242.1 locus 35 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs2_164242.1.26 locus 51.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs2_164242.1 locus 51.1 () Automated name-based View Maps
avgbs_cluster_33556.1 locus 35 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_cluster_33556.1 locus 51.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_cluster_33556.1.26 locus 51.1 () Automated name-based View Maps
avgbs_124732.1 locus 37 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_124732.1 locus 56.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 avgbs_124732.1.14 locus 56.5 () Automated name-based View Maps

GrainGenes is a product of the US Department of Agriculture.