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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2010-MxN_PcQTL
(Reference Set)
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Correspondences
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Maps Oat-2010-MxN_13
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2010-MxN_PcQTL [ View Map Set Info ]
Map Name: Oat-2010-MxN_13
Map Start: 0 cM
Map Stop: 42 cM
Features by Type:
5 locus
1 qtl
6 Total

Map Features

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Items 1 to 6 of 6.
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_13
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
umn5353y locus 0 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-13 umn5353y locus 0 () Automated name-based View Maps
cdo1502z locus 10 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-13 cdo1502z locus 10.5 () Automated name-based View Maps
cdo1502x locus 14.8 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-13 cdo1502x locus 15.3 () Automated name-based View Maps
umn5353x locus 20.2 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-13 umn5353x locus 20.3 () Automated name-based View Maps
p40m58m8 locus 42 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-13 p40m58m8 locus 39.8 () Automated name-based View Maps
QPc.MxN-13 qtl 0 No other positions

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