*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2001-KxM
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2001-KxM_3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2001-KxM [ View Map Set Info ]
Map Name: Oat-2001-KxM_3
Map Start: 0
Map Stop: 69
Features by Type:
16 locus
16 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 16 of 16.
Oat - Oat-2001-KxM - Oat-2001-KxM_3
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
cdo365a locus 0 Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_3 cdo365a locus 0 (cM) Automated name-based View Maps
acgcac680 locus 10 Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_3-38 acgcac680 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 acgcac680 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_3 acgcac680 locus 10 (cM) Automated name-based View Maps
aaccaa310 locus 20 Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_3 aaccaa310 locus 20 (cM) Automated name-based View Maps
cdo346a locus 23 Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 CDO346a locus 73.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 CDO346A locus 67.7 () Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_3-38 CDO346A locus 133.75 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 CDO346A locus 133.75 (cM) Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-8 CDO346a locus 72.75 () Automated name-based View Maps
Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_3 CDO346A locus 23 (cM) Automated name-based View Maps
Oat - Oat-2004-OT328xDumont - Oat-2004-OT328xDumont_2 cdo346a locus 10.7 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 CDO346A locus 67.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_1_3_38_break CDO346A locus 0 (cM) Automated name-based View Maps
acgcac600 locus 23 No other positions
acgcaa315 locus 23 No other positions
aaccat258 locus 23 No other positions
cdo395x locus 23 No other positions
acacac632 locus 23 Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 acacac632 locus 147.5 (cM) Automated name-based View Maps
bcd1562a locus 24 Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_3 BCD1562A locus 24 (cM) Automated name-based View Maps
Oat - Oat-2004-OT328xDumont - Oat-2004-OT328xDumont_2 bcd1562a locus 14.2 (cM) Automated name-based View Maps
cdo270d locus 26 No other positions
aaccaa184 locus 26 No other positions
aaccac288 locus 26 No other positions
cdo1319a locus 32 Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_3 CDO1319A locus 32 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_3 CDO1319A locus 126.56 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 cdo1319a locus 81.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 CDO1319A locus 3 () Automated name-based View Maps
Oat - Oat-2002-KxO - Oat-2002-KxO_3_38 cdo1319a locus 92 (cM) Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO3_38 cdo1319a locus 81 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_3-38 CDO1319A locus 102.5 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 CDO1319A locus 102.5 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28 CDO1319A locus 3 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_1_3_38_break CDO1319A locus 9 (cM) Automated name-based View Maps
acccac458 locus 32 No other positions
cdo549a locus 69 Oat - Oat-2009-KxO - Oat-2009-KxO_1_3_38_X1 CDO549A locus 37 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 CDO549A locus 65.9 () Automated name-based View Maps
Oat - Oat-2002-KxO - Oat-2002-KxO_3_38 cdo549a locus 146 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 CDO549A locus 71.25 (cM) Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO3_38 cdo549a locus 136 (cM) Automated name-based View Maps
Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_3 CDO549A locus 69 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 cdo549a locus 136 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_23 CDO549A locus 4.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28 CDO549A locus 65.9 () Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_3-38 CDO549A locus 71.25 (cM) Automated name-based View Maps

GrainGenes is a product of the US Department of Agriculture.