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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Diploid oat-Oat-1994-AmagxO
(Reference Set)
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Correspondences
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Maps Oat-1994-AmagxO_1
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Diploid oat - Oat-1994-AmagxO [ View Map Set Info ]
Map Name: Oat-1994-AmagxO_1
Map Start: 0 cM
Map Stop: 4.5 cM
Features by Type:
2 locus
2 Total

Map Features

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Items 1 to 2 of 2.
Diploid oat - Oat-1994-AmagxO - Oat-1994-AmagxO_1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
umn145 locus 0 Oat - Oat-1994-AmagxS - Oat-1994-AmagxS_1 umn145 locus 0 (cM) Automated name-based View Maps
Oat - Oat-1997-207xK - Oat-1997-207xK_1 umn145 locus 3.3 (cM) Automated name-based View Maps
Oat - Oat-2004-TxM - Oat-2004-TxM_25 umn145 locus 2 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_15 umn145 locus 5 (cM) Automated name-based View Maps
Pc91 locus 4.5 Oat - Oat-2010-SolxHi - Oat-2010-SolxHi_1 Pc91 locus 38.1 (cM) Automated name-based View Maps
Oat - Oat-1994-AmagxS - Oat-1994-AmagxS_1 Pc91 locus 4.5 (cM) Automated name-based View Maps

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