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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, physical
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-Physical-7H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
chromband
rearrangement
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, physical [ View Map Set Info ]
Map Name: Hordeum-Physical-7H
Map Start: -75
Map Stop: 73
Features by Type:
9 chromband
10 rearrangement
19 Total

Map Features

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[ Download Feature Correspondence Data ]
Items 1 to 19 of 19.
Barley - Barley, physical - Hordeum-Physical-7H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
T14al rearrangement -61 - -27 No other positions
T14af rearrangement -59 - -27 No other positions
T15ak rearrangement -47 - -27 No other positions
T15an rearrangement -36 - -27 No other positions
T15am rearrangement -36 - -27 No other positions
T17an rearrangement 24 - 40 No other positions
T13ak rearrangement 22 - 67 No other positions
T13am rearrangement 17 - 69 No other positions
T13as rearrangement 11 - 60 No other positions
T14ah rearrangement 11 - 14 No other positions
7H Centromere chromband -1 - 1 No other positions
7HS75 chromband -75 - -39 No other positions
7HS39 chromband -39 - -36 No other positions
7HS36 chromband -36 - -27 No other positions
7HS27 chromband -27 - -22 No other positions
7HS22 chromband -22 - -11 No other positions
7HS11 chromband -11 - -1 No other positions
7HL11 chromband 1 - 11 No other positions
7HL73 chromband 11 - 73 No other positions

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