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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, physical
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-Physical-6H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
chromband
rearrangement
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, physical [ View Map Set Info ]
Map Name: Hordeum-Physical-6H
Map Start: -65
Map Stop: 70
Features by Type:
11 chromband
12 rearrangement
23 Total

Map Features

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Items 1 to 23 of 23.
Barley - Barley, physical - Hordeum-Physical-6H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
T67au rearrangement -65 - -41 No other positions
T63aa rearrangement -41 No other positions
T65x rearrangement -41 - -19 No other positions
T65aa rearrangement -30 - -15 No other positions
T65aj rearrangement -10 - -8 No other positions
T65z rearrangement 40 - 70 No other positions
T65ap rearrangement 34 - 70 No other positions
T65ao rearrangement 32 - 70 No other positions
T65ak rearrangement 26 - 66 No other positions
T64ab rearrangement 25 - 62 No other positions
T65ab rearrangement 22 - 62 No other positions
T64z rearrangement 22 - 29 No other positions
6H(NOR) chromband -42 - -40 No other positions
6H Centromere chromband -1 - 1 No other positions
6HS65 chromband -65 - -42 No other positions
6HS41 chromband -40 - -15 No other positions
6HS15 chromband -15 - -10 No other positions
6HS10 chromband -10 - -8 No other positions
6HS8 chromband -8 - -1 No other positions
6HS7 chromband 1 - 7 No other positions
6HL10 chromband 7 - 10 No other positions
6HL16 chromband 10 - 16 No other positions
6HL70 chromband 16 - 70 No other positions

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