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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, physical
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-Physical-4H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
chromband
rearrangement
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, physical [ View Map Set Info ]
Map Name: Hordeum-Physical-4H
Map Start: -66
Map Stop: 77
Features by Type:
13 chromband
22 rearrangement
35 Total

Map Features

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Items 1 to 25 of 35.       of 2 | Next
Barley - Barley, physical - Hordeum-Physical-4H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
T42aw rearrangement -61 - -57 No other positions
T45ad rearrangement -66 - -54 No other positions
T43ae rearrangement -66 - -54 No other positions
T43ap rearrangement -66 - -32 No other positions
T46ab rearrangement -66 - -29 No other positions
T45ac rearrangement 29 - 44 No other positions
T45ar rearrangement 19 - 23 No other positions
T45aq rearrangement 12 - 13 No other positions
T46z rearrangement 0 - 7 No other positions
T41af rearrangement 45 - 77 No other positions
T47ae rearrangement 45 - 61 No other positions
T41al rearrangement 43 - 77 No other positions
T42ak rearrangement 41 - 77 No other positions
T47v rearrangement 38 - 47 No other positions
T45af rearrangement 36 - 69 No other positions
T43ag rearrangement 28 - 65 No other positions
T45ag rearrangement 28 - 62 No other positions
T45aj rearrangement 28 - 53 No other positions
T45ah rearrangement 28 - 41 No other positions
T45ai rearrangement 28 - 40 No other positions
T42al rearrangement 19 - 20 No other positions
T41ah rearrangement 11 - 14 No other positions
4H Centromere chromband -1 - 1 No other positions
4HS66 chromband -66 - -29 No other positions
4HS29 chromband -29 - -23 No other positions

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