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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, physical
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-Physical-2H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
chromband
rearrangement
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, physical [ View Map Set Info ]
Map Name: Hordeum-Physical-2H
Map Start: -71
Map Stop: 87
Features by Type:
17 chromband
10 rearrangement
27 Total

Map Features

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[ Download Feature Correspondence Data ]
Items 1 to 25 of 27.       of 2 | Next
Barley - Barley, physical - Hordeum-Physical-2H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
T23am rearrangement -63 - -49 No other positions
T23aj rearrangement -52 - -42 No other positions
T25af rearrangement -39 - -30 No other positions
T24al rearrangement -11 - -10 No other positions
T24aw rearrangement -11 - -7 No other positions
T25ah rearrangement 84 - 87 No other positions
T27ad rearrangement 38 - 84 No other positions
T24ak rearrangement 31 - 67 No other positions
T25ad rearrangement 31 - 61 No other positions
T25as rearrangement 31 - 57 No other positions
2H Centromere chromband -1 - 1 No other positions
2HS71 chromband -71 - -66 No other positions
2HS66 chromband -66 - -63 No other positions
2HS63 chromband -63 - -42 No other positions
2HS42 chromband -42 - -39 No other positions
2HS39 chromband -39 - -30 No other positions
2HS30 chromband -30 - -26 No other positions
2HS26 chromband -26 - -15 No other positions
2HS15 chromband -15 - -11 No other positions
2HS11 chromband -11 - -7 No other positions
2HS7 chromband -7 - -1 No other positions
2HL8 chromband 1 - 8 No other positions
2HL11 chromband 8 - 11 No other positions
2HL16 chromband 11 - 16 No other positions
2HL26 chromband 16 - 26 No other positions

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