*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Avena_2013_SNP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Avena_2013_SNP_21D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Avena_2013_SNP [ View Map Set Info ]
Map Name: Avena_2013_SNP_21D
Map Start: 3.44
Map Stop: 65.63
Features by Type:
10 locus
10 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 10 of 10.
Oat - Avena_2013_SNP - Avena_2013_SNP_21D
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES02_c15481 locus 3.44 Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 GMI_ES02_c15481_563 locus 75.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES02_c15481_563 locus 75.3 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-12 GMI_ES02_c15481 locus 52.1 () Automated name-based View Maps
GMI_ES01_c15405 locus 25.14 Oat - Oat-2016-OxP - Oat-2016-OxP_16c GMI_ES01_c15405_389 locus 113.3 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-12 GMI_ES01_c15405 locus 68.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES01_c15405_389 locus 54.6 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_24 GMI_ES01_c15405_389 locus 0 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-27 GMI_ES01_c15405_389 locus 4.09 (cM) Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-22 GMI_ES01_c15405_389 locus 2.75 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 GMI_ES01_c15405_389 locus 54.6 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM18 GMI_ES01_c15405_389 locus 2.1 () Automated name-based View Maps
GMI_ES17_c5832 locus 26.43 Oat - Oat-2016-PxB - Oat-2016-PxB_24 GMI_ES17_c5832_342 locus 2.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES17_c5832_342 locus 52.4 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-12 GMI_ES17_c5832 locus 69.4 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_5 GMI_ES17_c5832_342 locus 40.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 GMI_ES17_c5832_342 locus 52.4 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM18 GMI_ES17_c5832_342 locus 0.9 () Automated name-based View Maps
GMI_DS_CC7370 locus 26.43 Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 GMI_DS_CC7370_52 locus 52.4 () Automated name-based View Maps
Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-5 GMI_DS_CC7370 locus 120 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-12 GMI_DS_CC7370 locus 69.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_DS_CC7370_52 locus 52.4 () Automated name-based View Maps
GMI_ES_CC3702 locus 26.43 Oat - Oat-2016-KxO - Oat-2016-KxO_29 GMI_ES_CC3702_289 locus 2 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM18 GMI_ES_CC3702_289 locus 1.8 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_5 GMI_ES_CC3702_289 locus 40.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 GMI_ES_CC3702_289 locus 52.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES_CC3702_289 locus 52.8 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_24 GMI_ES_CC3702_289 locus 2.2 () Automated name-based View Maps
GMI_DS_CC9316 locus 31.25 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_DS_CC9316_186 locus 49.8 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-12 GMI_DS_CC9316 locus 73.6 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_29 GMI_DS_CC9316_186 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 GMI_DS_CC9316_186 locus 49.8 () Automated name-based View Maps
GMI_ES_CC12468 locus 37.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES_CC12468_66 locus 46.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 GMI_ES_CC12468_66 locus 46.6 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-12 GMI_ES_CC12468 locus 78.6 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_16c GMI_ES_CC12468_66 locus 105.4 () Automated name-based View Maps
GMI_ES15_c15766 locus 49.7 Oat - Oat-2016-SxH - Oat-2016-SxH_5 GMI_ES15_c15766_421 locus 28.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES15_c15766_421 locus 26.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 GMI_ES15_c15766_421 locus 26.3 () Automated name-based View Maps
GMI_DS_A3_468 locus 50.9 Oat - Oat-2016-AxM - Oat-2016-AxM_22 GMI_DS_A3_468_401 locus 25.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 GMI_DS_A3_468_401 locus 31.3 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_5 GMI_DS_A3_468_401 locus 29.7 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-43 GMI_DS_A3_468_401 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_27 GMI_DS_A3_468_401 locus 24.98 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_DS_A3_468_401 locus 31.3 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_4a GMI_DS_A3_468_401 locus 19.6 () Automated name-based View Maps
GMI_ES17_c3975 locus 65.63 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 GMI_ES17_c3975_209 locus 23.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 GMI_ES17_c3975_209 locus 23.5 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_10 GMI_ES17_c3975_209 locus 12.3 () Automated name-based View Maps
Oat - Oat-2013-SNP-OxP - Oat-2013-SNP-OxP-12 GMI_ES17_c3975 locus 98.8 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_16c GMI_ES17_c3975_209 locus 85.3 () Automated name-based View Maps

GrainGenes is a product of the US Department of Agriculture.