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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, CIMMYT Integrated
(Reference Set)
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Correspondences
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Maps CIMMYT-integrated-3D
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, CIMMYT Integrated [ View Map Set Info ]
Map Name: CIMMYT-integrated-3D
Map Start: 1.5
Map Stop: 6
Features by Type:
6 locus
6 Total

Map Features

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Items 1 to 6 of 6.
Wheat ABD - Wheat, CIMMYT Integrated - CIMMYT-integrated-3D
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
wPt6358 locus 2.4 Wheat ABD - Wheat, CIMMYT Integrated - CIMMYT-integrated-1A wPt6358 locus 41.49 () Automated name-based View Maps
wPt1336 locus 1.5 Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-3D XwPt1336-3D locus 0 () Automated name-based View Maps
wPt9401 locus 5.1 Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-3D XwPt9401-3D locus 1 () Automated name-based View Maps
wPt1741 locus 5.4 Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-3D XwPt1741-3D locus 1 () Automated name-based View Maps
wPt1081 locus 5.8 No other positions
wPt2757 locus 6 No other positions

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