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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, CIMMYT Integrated
(Reference Set)
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Correspondences
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Maps CIMMYT-integrated-2D
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, CIMMYT Integrated [ View Map Set Info ]
Map Name: CIMMYT-integrated-2D
Map Start: 1.73
Map Stop: 10.69
Features by Type:
20 locus
20 Total

Map Features

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Items 1 to 20 of 20.
Wheat ABD - Wheat, CIMMYT Integrated - CIMMYT-integrated-2D
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
wPt6419 locus 1.73 No other positions
wPt2644 locus 3.26 Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-2D XwPt2644-2D locus 52.91 () Automated name-based View Maps
wPt8319 locus 3.9 No other positions
wPt3202 locus 4.07 No other positions
wPt6343 locus 4.07 No other positions
wPt0298 locus 4.53 No other positions
wPt2781 locus 4.53 No other positions
wPt6003 locus 4.53 No other positions
wPt7375 locus 4.53 Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-7D XwPt7375-7D locus 27.89 () Automated name-based View Maps
wPt9749 locus 4.88 No other positions
wPt0619 locus 5.23 No other positions
wPt4144 locus 5.31 No other positions
wPt1991 locus 5.58 No other positions
wPt8524 locus 6.86 Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-7D XwPt8524-7D locus 26.65 () Automated name-based View Maps
wPt1554 locus 7.61 No other positions
wPt0330 locus 8.02 Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-2D XwPt0330-2D locus 28.72 () Automated name-based View Maps
wPt6574 locus 8.72 No other positions
wPt6752 locus 8.77 No other positions
wPt3728 locus 9.49 No other positions
wPt4413 locus 10.69 Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-2D XwPt4413-2D locus 101.51 () Automated name-based View Maps

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