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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Sugarcane-Saccharum, CU/CIBR
(Reference Set)
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Maps Saccharum-CU/CIBR-9
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
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Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
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Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Sugarcane - Saccharum, CU/CIBR [ View Map Set Info ]
Map Name: Saccharum-CU/CIBR-9
Map Start: 0
Map Stop: 88.9
Features by Type:
9 locus
9 Total

Map Features

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Items 1 to 9 of 9.
Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-9
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
SG030b locus 42.2 Sugarcane - Saccharum, Cornell - Saccharum-9 SG030b locus 28.3 () Automated name-based View Maps
SG161a locus 69.4 Sugarcane - Saccharum, Cornell - Saccharum-9 SG161a locus 0 () Automated name-based View Maps
UMC128a locus 30.7 Sugarcane - Saccharum, Cornell - Saccharum-9 UMC128a locus 42.3 () Automated name-based View Maps
UMC147a locus 50.7 Sugarcane - Saccharum, Cornell - Saccharum-9 UMC147a locus 21 () Automated name-based View Maps
A19.1a locus 88.9 No other positions
CD0087B locus 56.4 No other positions
K20.2s locus 83.5 No other positions
L13.2s locus 16.2 No other positions
U12.1s locus 0 No other positions

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