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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sugarcane-Saccharum, Cornell
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Saccharum-24
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Sugarcane - Saccharum, Cornell [ View Map Set Info ]
Map Name: Saccharum-24
Map Start: 0
Map Stop: 4.5
Features by Type:
4 locus
4 Total

Map Features

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Items 1 to 4 of 4.
Sugarcane - Saccharum, Cornell - Saccharum-24
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
CDSR146b locus 3 No other positions
CDSR160b locus 4.5 No other positions
UMC015b locus 4.5 Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-24 UMC015b locus 66.9 () Automated name-based View Maps
UMC031a locus 0 Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-24 UMC031a locus 62.7 () Automated name-based View Maps

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