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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sugarcane-Saccharum, Cornell
(Reference Set)
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Correspondences
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Maps Saccharum-1
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Sugarcane - Saccharum, Cornell [ View Map Set Info ]
Map Name: Saccharum-1
Map Start: 0
Map Stop: 127
Features by Type:
13 locus
13 Total

Map Features

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Items 1 to 13 of 13.
Sugarcane - Saccharum, Cornell - Saccharum-1
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
CDO0089a locus 108.1 No other positions
CDO0202b locus 127 No other positions
CDSB031a locus 11.1 No other positions
CDSB031b locus 10 No other positions
CDSB032b locus 124.2 No other positions
CDSR012b locus 68.5 No other positions
CDSR065b locus 0 No other positions
CDSR120a locus 19.2 No other positions
CDSR153a locus 121.4 Sugarcane - Saccharum, Cornell - Saccharum-16 CDSR153a locus 38.7 () Automated name-based View Maps
SG012a locus 118.1 Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-1 SG012a locus 7 () Automated name-based View Maps
SG168b locus 52.1 Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-1 SG168b locus 59 () Automated name-based View Maps
SG302b locus 100.3 Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-1 SG302b locus 19.7 () Automated name-based View Maps
UMC027a locus 110.3 Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-1 UMC027a locus 15.5 () Automated name-based View Maps

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