*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, OxT
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-OxT-9
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, OxT [ View Map Set Info ]
Map Name: Oat-OxT-9
Map Start: 0
Map Stop: 48.5
Features by Type:
9 locus
9 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 9 of 9.
Oat - Oat, OxT - Oat-OxT-9
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
CDO962c locus 24.3 Oat - Oat-2016-OxT - Oat-2016-OxT_16 CDO962C locus 48.2 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-3 CDO962c locus 164.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 CDO962C locus 129.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 CDO962C locus 129.6 () Automated name-based View Maps
bcd149 locus 13.9 Oat - Oat, KxO, 2003 - Oat-KxO/2003-2 bcd149 locus 4.06 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_2 BCD149 locus 5 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 BCD149 locus 142 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_2 BCD149 locus 19 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 BCD149 locus 142 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xbcd149 locus 31.3 () Automated name-based View Maps
cdo1466 locus 12.3 Oat - Oat-2001-KxO - Oat-2001-KxO_2 CDO1466 locus 5 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 CDO1466 locus 139.4 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO2 cdo1466 locus 1.88 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 CDO1466 locus 147.3 () Automated name-based View Maps
Oat - Oat-1997-64Lines - Oat-1997-64Lines_2 cdo1466 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_2 CDO1466 locus 17 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 CDO1466 locus 139.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 CDO1466 locus 147.3 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_19 cdo1466 locus 41 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_2 CDO1466 locus 22.43 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xcdo1466 locus 30.2 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-2 cdo1466 locus 5.28 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO2 cdo1466 locus 5 (cM) Automated name-based View Maps
cdo17b locus 0 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 CDO17B locus 157.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 CDO17B locus 157.8 () Automated name-based View Maps
isu47a locus 31 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 ISU47A locus 140.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 ISU47A locus 140.5 () Automated name-based View Maps
rz892a locus 20.9 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 RZ892A locus 142.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 RZ892A locus 142.3 () Automated name-based View Maps
e40m48-144.o locus 39.3 No other positions
aa17.550 locus 48.5 No other positions
kv1.9C locus 10 No other positions

GrainGenes is a product of the US Department of Agriculture.