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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, CxI
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-CxI-19
Start
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, CxI [ View Map Set Info ]
Map Name: Oat-CxI-19
Map Start: 0
Map Stop: 94
Features by Type:
16 locus
16 Total

Map Features

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[ Download Feature Correspondence Data ]
Items 1 to 16 of 16.
Oat - Oat, CxI - Oat-CxI-19
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
e2m3-8C locus 0 No other positions
e2m3-2a locus 0 No other positions
e2m3-3 locus 3 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-36 e2m3-3 locus 42 () Automated name-based View Maps
e2m2-12 locus 6 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-24-26 e2m2-12 locus 100 () Automated name-based View Maps
e2m2-11 locus 6 No other positions
e4m6-7 locus 9 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-8 e4m6-7 locus 40 () Automated name-based View Maps
e6m5-1n locus 15 No other positions
e4m6-3 locus 30 No other positions
e9m5-2b locus 30 No other positions
e5m5-4 locus 45 No other positions
e5m5-1 locus 57 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-11 e5m5-1 locus 0 () Automated name-based View Maps
e6m5-9 locus 57 No other positions
e3m3-16 locus 69 No other positions
e3m5-8 locus 69 No other positions
e5m1-9n locus 78 No other positions
e3m7-1 locus 94 No other positions

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