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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, CxI
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps Oat-CxI-16
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, CxI [ View Map Set Info ]
Map Name: Oat-CxI-16
Map Start: 0
Map Stop: 61.5
Features by Type:
5 locus
5 Total

Map Features

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Items 1 to 5 of 5.
Oat - Oat, CxI - Oat-CxI-16
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
E3M5-11b locus 43.5 Diploid oat - Diploid Oat, AFLP - Avena-Yu-C E3M5-11b locus 365.3 () Automated name-based View Maps
e2m3-8aB locus 0 No other positions
e1m6-14 locus 18 No other positions
e3m7-5 locus 28.5 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 e3m7-5 locus 91 () Automated name-based View Maps
e7m2-5 locus 61.5 No other positions

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