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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, CxI
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-CxI-12
Start
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, CxI [ View Map Set Info ]
Map Name: Oat-CxI-12
Map Start: 0
Map Stop: 72
Features by Type:
13 locus
13 Total

Map Features

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Items 1 to 13 of 13.
Oat - Oat, CxI - Oat-CxI-12
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
e1m8-3n locus 0 No other positions
e1m2-3b locus 0 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5 e1m2-3b locus 16 () Automated name-based View Maps
e2m3-10 locus 18 No other positions
e9m5-10 locus 30 No other positions
e1m6-3 locus 39 No other positions
e8m1-3 locus 40.5 No other positions
e9m5-8 locus 43.5 No other positions
e3m3-12 locus 48 No other positions
e5m7-5 locus 54 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5 e5m7-5 locus 24 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-34 e5m7-5 locus 8 () Automated name-based View Maps
e5m7-6 locus 54 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5 e5m7-6 locus 28 () Automated name-based View Maps
e6m5-8n locus 63 No other positions
e1m3-14 locus 72 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 e1m3-14 locus 39 () Automated name-based View Maps
e2m3-8aA locus 72 No other positions

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