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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, CxI
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-CxI-7
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, CxI [ View Map Set Info ]
Map Name: Oat-CxI-7
Map Start: 0
Map Stop: 70.5
Features by Type:
9 locus
9 Total

Map Features

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Items 1 to 9 of 9.
Oat - Oat, CxI - Oat-CxI-7
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
e6m4-2 locus 0 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-36 e6m4-2 locus 78 () Automated name-based View Maps
e6m4-1a locus 12 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-36 e6m4-1a locus 70 () Automated name-based View Maps
e1m6-2 locus 13 No other positions
e6m5-5a locus 25 No other positions
e7m2-6 locus 37 No other positions
e1m6-15a locus 49 No other positions
e1m3-5 locus 55 No other positions
e6m6-3n locus 67.5 No other positions
e6m6-2n locus 70.5 No other positions

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