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GrainGenes Trait Study Report: Stripe rust resistance, emmer wheat, Liu2017c

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Trait Study	Stripe rust resistance, emmer wheat, Liu2017c
Trait	Reaction to Puccinia striiformis Westend.
Reference	Liu W et al. (2017) Genome-wide association mapping reveals a rich genetic architecture of stripe rust resistance loci in emmer wheat (Triticum turgidum ssp. dicoccum) Theoretical and Applied Genetics 130:2249-2270.
Ontology	TO:0020055 Planteome wheat stripe rust disease resistance
Population Size	176
Population Type	worldwide domesticated emmer germplasm collection
QTL Analysis Method	GWAS done using GAPIT. See methods for complete GWAS parameters
Markers Tested	5106
QTLs Found	37
Comment	Curator Note (VCB, 04/2019). QTL names and markers associated with QTL in this traitstudy are from two sources, the primary reference and information embedded in the QTL track of the GrainGenes genome browser for the Triticum turgidum ssp. durum cv. Svevo (RefSeq 1.0) assembly. QTL were initially curated by members of the International Durum Genome Sequencing Consortium who assigned the encoded QTL name and information on the assembly including computationally-aligned significant markers (SNPs, DArTs, SSRs). To curate these QTL for GrainGenes, the primary reference was reviewed, the original QTL name was synonymized, and original markers were added to the significant marker list shown on the QTL report page. GrainGenes users are advised to review the qtl track in the Svevo assembly for additional position information and confidence intervals, as well as the primary reference for additional statistics.
QTL	QYr.Ttd-1A.1 [ Show all 37 ]

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