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GrainGenes Sequence Report: AL501171

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Sequence
AL501171
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC172434
NCBI UniGene
Hv.8287
DB Remark
Locus Source: Hordeum vulgare subsp. vulgare
UniGene title 'Transcribed locus, strongly similar to NP_200637.1 RPT3 (root phototropism 3); ATPase [Arabidopsis thaliana]'
Keyword
EST
Species
Hordeum vulgare subsp. vulgare
Cultivar
barke
Clone Library
Hordeum vulgare Barke roots
Tissue
roots
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
AL501171 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare cDNA clone HW03E18u 3', mRNA sequence.
Strain
lab_host XLOLR
vulgare
Clone
HW03E18u
Probe
GBS6
Remark
DB_xref: taxon:112509
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Michalek W; Institute for Plant Genetics and Crop Plant Research; Corrensstr.3, D-06466 Gatersleben, Germany; Email: michalek@ipk-gatersleben.de, http:
Note: Vector: plasmid pBK-CMV; Site_1: EcoRI; Site_2: XhoI; mRNA was made from roots of spring barley variety 'Barke', a high quality malting variety. Roots were grown for two days on filter paper at room temperature Cloning sites: EcoRI (5'-end of cDNA) and XhoI (3'-end of cDNA). NOTE: Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRI adapter. Average insert size is 1 kb Sequence trimming: Vector sequences and sequence ends were trimmed from the 5'-and 3'-end until a 50 bp window contains less than two ambiguities. The maximum length was set to 700 bp
DNA
ttttttttttttttttttttttttttttggtcaagcgaaactttaggaag
aaggaattgtacagacaagtagcttaacaaggatggtgagactgaacgtg
caaactacatgagcaccgagatacaaggatattttatcaggcgactatcc
acaaattcatcgatagtgttaatcatgtcgccagtagaaaataaagcatc
ctcttaacagtttgttgtctcatttgtagaagtcaaagtctgactcaggc
ttcttgacgttggttcggtaacccttctcgaagtccttggggaggataac
ataccgatttttgcggacagcatgcatgccagcttcctggcaaatagcag
tgatatcagcagcactgattttatcaggtctggagacataatcttccaaa
tcaacctcatcactcaagttcatcttagcagtacaaacttggaaaacaag
cctcttctgcctccgatccggcagagggaactcaattttcctgtccagtc
ttcctggacgcagcagagcaggatctagagtatctgcccgattggttgcc
attataaccttcacattcactgtccgatcaaaatccatccatctggattc
agtaagttccatcaagaaatacgcctgaaacttctccggtcagcccccgg
tcctgaagcatccgaatccgaggcaagtgggctaattagcaatcaaaccc

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