Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Sequence Report: Ta.3175.2.S1_a_at

[Submit comment/correction]

Sequence	CA497625
Contig	Ta.3175.2.S1_a_at NSFT03P2_Contig11417
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC346476
NCBI UniGene	Ta.3175
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, strongly similar to NP_001057013.1 Os06g0186900 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Species	Triticum aestivum
Cultivar	Chinese Spring
Clone Library	Wheat meiotic anther cDNA library
Tissue	Anther
Developmental Stage	Meiotic stages pre-meiosis-metaphase I
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE3230_C07_E14ZT Wheat meiotic anther cDNA library Triticum aestivum cDNA clone WHE3230_C07_E14, mRNA sequence.
Strain	lab_host E. coli DH10B
Clone	WHE3230_C07_E14
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: T7 primer. Note: Vector: pSPORT1; Site_1: SalI; Site_2: NotI; Plants were grown in a glasshouse. Anther meiotic stage was determined by removing anthers from individual primary florets. One anther was sacrificed for microscopic staging , and if determined to be between (and including) meiotic stages pre-meiosis and metaphase I, the remaining two anthers were collected and pooled for library construction. The tissue, total RNA, and poly(A) RNA were prepared, cDNA synthesised, and directionally ligated into pSPORT1 by Tim Sutton in the P Langridge Lab at the Department of Plant Science, University of Adelaide, Waite Campus, Australia. Average insert size 1.5Kb. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: pSPORT1; Site_1: SalI; Site_2: NotI; Plants were grown in a glasshouse. Anther meiotic stage was determined by removing anthers from individual primary florets. One anther was sacrificed for microscopic staging, and if determined to be between (and including) meiotic stages pre-meiosis and metaphase I, the remaining two anthers were collected and pooled for library construction. The tissue, total RNA, and poly(A) RNA were prepared, cDNA synthesised, and directionally ligated into pSPORT1 by Tim Sutton in the P Langridge Lab at the Department of Plant Science, University of Adelaide, Waite Campus, Australia. Average insert size 1.5Kb. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA	ccacgcgtccgagaagcgcaagggcaaggtggtggagatggaggacataa gccgggtgtaccaccctcaggtacgcaatccagctgatcacttctgccgg cctggcttgccagaagcgcaagggcaaggtggtggagatggaggacataa gccgggtgtaccacctgtttctggacgtgaagagatcgacgcagttcttg atcgacagccagagcgactacatgttcagtgaagtgcaaggggattcaga tggggatgacgccatgcagtcctagacggagaattttgcaatgtaactgg ggttggtttgtatggctcgtgtatcttggaatcttgttgctcgtttagat tagtcttaagcgtgagatgttgttacctgacaagcacacttgatgggtgc agtgagctatgttaacggttgtaactggtgacttcacaattcgtttattt cttttcctttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.