GrainGenes Sequence Report: CA023120

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Sequence

CA023120

External Databases

TIGR Gene Index

NCBI UniGene

DB Remark

Locus Source: Hordeum vulgare subsp. vulgare

UniGene title 'CDNA clone: FLbaf41j18, mRNA sequence'

Keyword

EST

Species

Hordeum vulgare subsp. vulgare

Cultivar

barke

Clone Library

Tissue

pericarp

Developmental Stage

0-7 DAP (days after pollination)

Data Source

genbank	Release 135, Apr 15 2003
genbank	Updated Nov 2006

Title

HZ45E17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45E17 5-PRIME, mRNA sequence.

Strain

lab_host XL10-Gold

vulgare

Clone

HZ45E17

Probe

BaSD17C05

Remark

DB_xref: taxon:112509

Feature: source: mol_type = 'mRNA';

Locus Comment: Contact: Stein Nils; Molecular Markers Group, Department Genbank; Institute of Plant Genetics and Crop Plant Research (IPK); Corrensstr. 3, 06466, Gatersleben, Germany; Tel: 039482-5522; Fax: 039482-5595; Email: stein@ipk-gatersleben.de; Insert Length: 536 Std Error: 0.00; Plate: 45 row: E column: 17; Seq primer: M13rev.

Note: Vector: pBluescript SK+; Site_1: EcoRI (5'-end of cDNA); Site_2: XhoI (3'-end of cDNA); pericarp 0-7 DAP(days after pollination). Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRIadapter used for cloning. To excise the insert, restriction sites upstream EcoRI should be used (e.g. BamHI, SalI,PstI). NOTE: Also due to the cloning system used Blue/white selection for recombinats is not 100% reliable.Average insert size is 900 bp

DNA

ctgcgccgacaacggcatcccgctccccaacgtcaactccaagatcctct
ccaaggtcatcgagtactgcaacaagcacgtccaggccaagcccgccgac
gccgccggacctggtgcgtccgatgcgctgccccccgccgatgacctcaa
gaactgggacgccgagttcgtcaaggtcgaccaagccaccctcttcgacc
tcatcctggccgcaaacttcctcaacatcaagggcctactggacctgacc
tgccagactgttgccgacatgatcaagggcaagacccctgaggagatccg
caagaccttcaacatcaagaacgacttcacgcccgacgaggaggaggaga
tccgcagggagaaccagtgggcctttgagtagaggagcatgtaggcgatg
ccatccgcactggatgaacaatgcttagtattagtcatgtctgcattata
tcgcccttttttatggttgtttttgtctatcctacagtcggatgaaaaac
aaatgggtttcagtcatagactgaaccaaatcatgc


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