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GrainGenes Sequence Report: CA017813

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Sequence
CA017813
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC160550
NCBI UniGene
Hv.3747
DB Remark
Locus Source: Hordeum vulgare subsp. vulgare
UniGene title 'CDNA clone: FLbaf83d21, mRNA sequence'
Keyword
EST
Species
Hordeum vulgare subsp. vulgare
Cultivar
barke
Clone Library
HV
Tissue
germinating seeds
Developmental Stage
germinating seeds (48-96 h)
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
HV06F17r HV Hordeum vulgare subsp. vulgare cDNA clone HV06F17 5-PRIME, mRNA sequence.
Strain
lab_host XL10-Gold
vulgare
Clone
HV06F17
Probe
baak20b06
Remark
DB_xref: taxon:112509
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Stein Nils; Molecular Markers Group, Department Genbank; Institute of Plant Genetics and Crop Plant Research (IPK); Corrensstr. 3, 06466, Gatersleben, Germany; Tel: 039482-5522; Fax: 039482-5595; Email: stein@ipk-gatersleben.de; Insert Length: 500 Std Error: 0.00; Plate: 6 row: F column: 17; Seq primer: M13rev.
Note: Vector: pBluescript SK+; Site_1: EcoRI (5'-end of cDNA); Site_2: XhoI (3'-end of cDNA); Roots were grown for two days on filter paper at room temperature. Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRIadapter used for cloning. To excise the insert, restriction sites upstream EcoRI should be used (e.g. BamHI, SalI,PstI). NOTE: Also due to the cloning system used Blue/white selection for recombinats is not 100% reliable.Average insert size is 1 kb
DNA
cggcacgaggctcccctcggtcctcccctttccccttcccctcaacgccg
tgggcggatctacccccgccgccgccgccgccgccgccgccggattccct
tctccagccactcggtgacctccgccgccgacgccgaccccaccccgtcc
cggtctttgccggccaccagattttgaagtaaggagagaagtccaaccaa
ccatggggaagcgaaaggcggccgccaagccaccccctaggaagaggatg
gacaagctcgatacggtcttctcctgcccattctgcaaccacgggagcag
cgttgaatgccggattgatatgaagaatctgattggtgaggctaattgtc
aaatctgccaggaaagcttcagcaccactgcaaatgcgctgactgaagct
attgatatatacagcgaatggatcgatgagtgtgagcgcgtcaacactgt
cgaagatgatgatggtgcatgagcatgtgtggttataatactctacgaac

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