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GrainGenes Sequence Report: CA001032

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Sequence
CA001032
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC154844
NCBI UniGene
Hv.22917
DB Remark
Locus Source: Hordeum vulgare subsp. vulgare
UniGene title 'CDNA clone: FLbaf174g17, mRNA sequence'
Keyword
EST
Species
Hordeum vulgare subsp. vulgare
Cultivar
barke
Clone Library
HS
Tissue
embryo + scutellum
Developmental Stage
0-16 hours after imbibition
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
HS05M17u HS Hordeum vulgare subsp. vulgare cDNA clone HS05M17 3-PRIME, mRNA sequence.
Strain
lab_host XL10-Gold
vulgare
Clone
HS05M17
Probe
BaGS13N14
Remark
DB_xref: taxon:112509
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Stein Nils; Molecular Markers Group, Department Genbank; Institute of Plant Genetics and Crop Plant Research (IPK); Corrensstr. 3, 06466, Gatersleben, Germany; Tel: 039482-5522; Fax: 039482-5595; Email: stein@ipk-gatersleben.de; Insert Length: 556 Std Error: 0.00; Plate: 5 row: M column: 17; Seq primer: M13uni.
Note: Vector: pBluescript SK+; Site_1: EcoRI (5'-end of cDNA); Site_2: XhoI (3'-end of cDNA); Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRIadapter used for cloning. To excise the insert, restriction sites upstream EcoRI should be used (e.g. BamHI, SalI,PstI). NOTE: Also due to the cloning system used Blue/white selection for recombinats is not 100% reliable.
DNA
aggttcaaaagcataatataataccgtgaacccaaatgttttaacaaact
ctgcttaagcatctctgaaacatccagcagaacaaacacgatatgatatt
taaggtatctgacaagttgacacaaacacgatattgcacaggaaacagtt
ctgaacttctgatgttccaaaattaggctaacccttgatgataccagaaa
gctaaagcttcaagtcagaccttcacttcttggccttctttggtgccgct
gctgccggagctggagctgcagccgctggtgccggtgcatgatctctggg
gccctgggccaatctctcctccctcctggcaatcttcctctccctgcttg
ccttgctcttggcacgcttggcctcaaactggtcagatagggtcttctct
cttgccttctcagccttggacttgtggatactctccatgaggaccctctt
gttcttgaacatgttacccttgaccttcaggtacatgtcatggtacatgt
gcttgtcgatcttctttgcctcacggtacttgcgcagaagacgcctcagc
acacgc

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