GrainGenes Sequence Report: BU989688
Sequence
BU989688
External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC190305
NCBI UniGene
Hv.11152
DB Remark
Locus Source: Hordeum vulgare subsp. vulgare UniGene title 'Transcribed locus, moderately similar to NP_001052573.1 Os04g0373400 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Hordeum vulgare subsp. vulgare
Cultivar
barke
Clone Library
HF
Tissue
caryopsis
Developmental Stage
developing caryopsis, 16-25 DAF (days after flowering)
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
HF22G20r HF Hordeum vulgare subsp. vulgare cDNA clone HF22G20 5-PRIME, mRNA sequence.
Strain
lab_host XL10-Gold vulgare
Clone
HF22G20
Probe
BaH49M02
Remark
DB_xref: taxon:112509 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Stein Nils; Molecular Markers Group, Department Genbank; Institute of Plant Genetics and Crop Plant Research (IPK); Corrensstr. 3, 06466, Gatersleben, Germany; Tel: 039482-5522; Fax: 039482-5595; Email: stein@ipk-gatersleben.de; Insert Length: 623 Std Error: 0.00; Plate: 22 row: G column: 20; Seq primer: M13rev. Note: Vector: pBluescript SK+; Site_1: EcoRI (5'-end of cDNA); Site_2: XhoI (3'-end of cDNA); developing caryopsis , 16-25 DAF(days after flowing) Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRIadapter used for cloning. To excise the insert, restriction sites upstream EcoRI should be used (e.g. BamHI, SalI,PstI). NOTE: Also due to the cloning system used Blue/white selection for recombinats is not 100% reliable.Average insert size is 940 bp Note: Vector: pBluescript SK+; Site_1: EcoRI (5'-end of cDNA); Site_2: XhoI (3'-end of cDNA); developing caryopsis, 16-25 DAF(days after flowing) Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRIadapter used for cloning. To excise the insert, restriction sites upstream EcoRI should be used (e.g. BamHI, SalI,PstI). NOTE: Also due to the cloning system used Blue/white selection for recombinats is not 100% reliable.Average insert size is 940 bp
DNA
ctcatcctggctctctacatcaggctctctccatcctgtaagaggacttg
gacagggttgtcaatggaggcatttcgcgacatccttagctttttgaggc
ttgcggttccatctgctctgatggtttgtttggagtggtggtcatttgag
ctgcttgtacttttttctggatttcttccaaatcctaagctcgaggcgtc
cgtgttgtccatcagtttaaatactctttcattagtattcagaatcccat
ctggacttggtgcagctataagcacccgtgtatcaaatgagctcggtgct
gggcgacctgatgctgcccgtttagcgacccatgtgatcatggttctggg
tcttgtgtcgagcgtatcggtcggtcttgccatcattttggtgcgcaatt
tatgggggtacgcatacagcaacgagaaggaagtggtggaatacattgcc
agaatgatgccaattctcgccgtcacattcttgtttgatgacctgcagtg
tgtcctttcaggtattgttaggggctgtggcttgcagaagattggcgcgt
atgtcaatcttagcgcatactaccttgtcggcatcccggcggctttatat
tttgcgtttgtgtcccatcttgg
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: BU989688
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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||