GrainGenes Sequence Report: BU984297
Sequence
BU984297
External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC167855
NCBI UniGene
Hv.18394
DB Remark
Locus Source: Hordeum vulgare subsp. vulgare UniGene title 'Transcribed locus, moderately similar to NP_001059454.1 Os07g0413800 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Hordeum vulgare subsp. vulgare
Cultivar
barke
Clone Library
HF
Tissue
caryopsis
Developmental Stage
developing caryopsis, 16-25 DAF (days after flowering)
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
HF03I16r HF Hordeum vulgare subsp. vulgare cDNA clone HF03I16 5-PRIME, mRNA sequence.
Strain
lab_host XL10-Gold vulgare
Clone
HF03I16
Probe
bast22A0802
Remark
DB_xref: taxon:112509 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Stein Nils; Molecular Markers Group, Department Genbank; Institute of Plant Genetics and Crop Plant Research (IPK); Corrensstr. 3, 06466, Gatersleben, Germany; Tel: 039482-5522; Fax: 039482-5595; Email: stein@ipk-gatersleben.de; Insert Length: 510 Std Error: 0.00; Plate: 3 row: I column: 16; Seq primer: M13rev. Note: Vector: pBluescript SK+; Site_1: EcoRI (5'-end of cDNA); Site_2: XhoI (3'-end of cDNA); developing caryopsis , 16-25 DAF(days after flowing) Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRIadapter used for cloning. To excise the insert, restriction sites upstream EcoRI should be used (e.g. BamHI, SalI,PstI). NOTE: Also due to the cloning system used Blue/white selection for recombinats is not 100% reliable.Average insert size is 940 bp Note: Vector: pBluescript SK+; Site_1: EcoRI (5'-end of cDNA); Site_2: XhoI (3'-end of cDNA); developing caryopsis, 16-25 DAF(days after flowing) Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRIadapter used for cloning. To excise the insert, restriction sites upstream EcoRI should be used (e.g. BamHI, SalI,PstI). NOTE: Also due to the cloning system used Blue/white selection for recombinats is not 100% reliable.Average insert size is 940 bp
DNA
cggcacgaggcttcgcttggctcgacgacgccgacgtcggcgaggtgccg
ttcgcgtggaacttcctcgtggggcacaaccgcgtggacccggcggacgt
gggcgggaccgcgccgcgcgccatacactacacgtccggcgggccgtggt
tcgagctgtacaaagactgcgagttcgccgacctctggatccaggagcgc
gacgcgtacgagtcggaggagaaagaaggcgaggtggaaggcacaagagt
gccatcatcgtctgcagttgctgtggacgcatgatgcaccacgtgttccg
gtttaatttttttacacagcacaccacgtgttccgttcgtctttgttggt
taatttgcttgtttgacgcgcggtcgtgtcactgcgtacgtgccgttgtc
aagttagttcctactgcaagtgtaacgatcgagtaccatgtgtaagaata
aggacctgtaaggcgcgttccttgagggccaagtatccaatantaattat
cggttttgct
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: BU984297
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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||