Query (optional)   in Class  

GrainGenes Sequence Report: BU977495

[Submit comment/correction]

Sequence
BU977495
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC166999
NCBI UniGene
Hv.28263
DB Remark
Locus Source: Hordeum vulgare subsp. vulgare
UniGene title 'Transcribed locus, moderately similar to NP_001053447.1 Os04g0541900 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Hordeum vulgare subsp. vulgare
Cultivar
barke
Clone Library
HA
Tissue
embryosac
Developmental Stage
0-7 DAP (days after pollination)
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
HA11I10u HA Hordeum vulgare subsp. vulgare cDNA clone HA11I10 3-PRIME, mRNA sequence.
Strain
lab_host XL10-Gold
vulgare
Clone
HA11I10
Probe
GBS705
Remark
DB_xref: taxon:112509
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Stein Nils; Molecular Markers Group, Department Genbank; Institute of Plant Genetics and Crop Plant Research (IPK); Corrensstr. 3, 06466, Gatersleben, Germany; Tel: 039482-5522; Fax: 039482-5595; Email: stein@ipk-gatersleben.de; Insert Length: 515 Std Error: 0.00; Plate: 11 row: I column: 10; Seq primer: M13rev.
Note: Vector: pBluescript SK+; Site_1: EcoRI (5'-end of cDNA); Site_2: XhoI (3'-end of cDNA); 0-7 DAP(days after pollination) Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRIadapter used for cloning. To excise the insert, restriction sites upstream EcoRI should be used (e.g. BamHI, SalI,PstI). NOTE: Also due to the cloning system used Blue/white selection for recombinats is not 100% reliable. Average insert size is 1 kb
DNA
caggggaaatggtattggattaaaattgttagctgttacatctcatgagt
tgtcaaaatatttcatgaaattccagaatgtggcataaaataactcttgt
ctactagtctcagaactattccatcaaaataagctggaaggagaaatgac
tgcaagacacaacctgtagatataggttcacgaggaggaagtatcatgaa
atctccattcttcttgctcaaaattccgatcacactcaatctcattcctt
ccgtgatatatccttcctcaagacggataagctgagcttcttcaaaaaaa
agatttctttcttctagccaacatttcaaggttgaagatagatcagtact
tctgcttgttgtaaccaaaacattttcatcgatcaatggaacaactttcg
tgtggtatccagctttcaccaaggctcttttgccggattttgcatctgtt
atgtaaaaatcagcagcaaatctctcagcatgtgtcaatttccacctgga
acaattatttttagg

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.