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GrainGenes Sequence Report: BQ660402

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Sequence
BQ660402
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC192922
NCBI UniGene
Hv.30855
DB Remark
Locus Source: Hordeum vulgare subsp. vulgare
UniGene title 'Transcribed locus, moderately similar to NP_001051155.1 Os03g0729500 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Hordeum vulgare subsp. vulgare
Cultivar
barke
Clone Library
HI
Tissue
female inflorescences
Developmental Stage
female inflorescences (approx. 3 mm in size)
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
HI02F16u HI Hordeum vulgare subsp. vulgare cDNA clone HI02F16 3-PRIME, mRNA sequence.
Strain
lab_host XL10-Gold
vulgare
Clone
HI02F16
Probe
bast22B0204
Remark
DB_xref: taxon:112509
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Stein Nils; Molecular Markers Group, Department Genbank; Institute of Plant Genetics and Crop Plant Research (IPK); Corrensstr. 3, 06466, Gatersleben, Germany; Tel: 039482-5522; Fax: 039482-5595; Email: stein@ipk-gatersleben.de; Insert Length: 538 Std Error: 0.00; Plate: 2 row: F column: 16; Seq primer: M13uni.
Note: Vector: pBluescript SK+; Site_1: EcoRI (5'-end of cDNA); Site_2: XhoI (3'-end of cDNA); Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRIadapter used for cloning. To excise the insert, restriction sites upstream EcoRI should be used (e.g. BamHI, SalI,PstI). NOTE: Also due to the cloning system used Blue/white selection for recombinats is not 100% reliable.
DNA
ggcattgcaacattaattggacattatcagatgatatgcaacaacgtagt
agtaccaccaaatccatccacagacacacaacacatacaacgtcaaatac
ccagcgaattctaaggttacatcgaaaaaggaatagaaaaccccaacatc
cagaagcagagaagacaacaacagattagtcccaaatgacaagccacaac
gtaaaatgcttctggatacgatgttggatatgtaacaaggtccgtgaaga
aggcttgcccaagttcgttcattgccggacttcgttgccggccggccagc
ctccttcttccagctcccatggtcagaactcagaagcagcagcagctcac
atcagccggatgctggggtgattcacgacgatggagccgagatcatcccg
cgggacaccgtcatacacgccgtggtattcctgcctggggctgctgccgg
tgctgctggacaccgacccgaaggcggtcctctgcagcacccccacgggg
gacgactccagcgggctcgagtcccaggcgtccgtcat

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