GrainGenes Sequence Report: BQ161872
Sequence
BQ161872
Contig
Ta.8419.1.A1_at NSFT03P2_Contig3793
External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC322671
wEST map position
BQ161872
NCBI UniGene
Ta.8419
DB Remark
Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001050268.1 Os03g0389000 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Triticum aestivum
Cultivar
Sumai3
Chromosome
2AL 2BL 2DL 3BL 3DL
Clone Library
Wheat Fusarium graminearum infected spike cDNA library
Tissue
Spike
Developmental Stage
Adult plant
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
WHE0483_f06_k11zT Wheat Fusarium graminearum infected spike cDNA library Triticum aestivum cDNA clone WHE0483_f06_k11, mRNA sequence.
Strain
lab_host E. coli SOLR
Clone
WHE0483_f06_k11
Probe
MAG3090 WHE0483_f06_k11
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; This EST was generated by sequencing from the 3' end of the clone.; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20. No effort was taken; to identify ESTs of fungal origin from this library, thus this EST; could be of wheat or fungal origin.; Seq primer: T7 primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes were sprayed at anthesis with Fusarium graminearum. Total RNA, and poly(A) RNA were prepared and pooled from infected spike at 0, 6, 12, 24, 36 and 48 hours after inoculation, a cDNA library was made , and the cDNA clones were in vivo excised to give pBluescript phagemids in G. Muehlbauer lab at the University of Minnesota (Kruger, W.M., Muehlbauer, G.J., Pritsch, C., Vance, C.). The cDNA library should contain genes of both wheat and fungal pathogen origin. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes were sprayed at anthesis with Fusarium graminearum. Total RNA, and poly(A) RNA were prepared and pooled from infected spike at 0, 6, 12, 24, 36 and 48 hours after inoculation, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in G. Muehlbauer lab at the University of Minnesota (Kruger, W.M., Muehlbauer, G.J., Pritsch, C., Vance, C.). The cDNA library should contain genes of both wheat and fungal pathogen origin. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA
ttttttttttttttttttgattttaatcagtgatattgattctactgcag
tacaactgaaatgtcccgttcagtttgctcacaagtgcagtgcagaacag
gaccacagcatcattggtaaggcaaacgagccaattacatgactcggaac
aactccggcgcggaagaagtcacaggagaaagggcttccggtagatgtcg
aacatctcagaagagcagagctggggctcctgcacggcgctggaagtgat
catcttgcggacgaaggagccgatcctcccggggaggcggcggccggtcc
cctggctgtcgcggatcgtcgccctcatcgcgctcagcagccgcccgtac
gtcgtccccggctcggactccacggccctgatgaagctgtccgtcatggc
gccaatagcagcggtatcggagaacccctggacgctcgattccgtcgact
tctggtcgtcgttgcagccgctgatggagatggcgaggcctccgttggtg
cctttcggcttgcccggacggacgtggttctcccactgccacctgcagcc
c
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: BQ161872
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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||