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GrainGenes Sequence Report: BQ161233

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Sequence
BQ161233
Contig
Ta.22625.1.A1_s_at
Ta.8076.1.S1_at
TaAffx.110686.3.S1_s_at
NSFT03P2_Contig10763
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC300045
wEST map position
BQ161233
NCBI UniGene
Ta.8076
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_001047514.1 Os02g0634700 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
6AL
6DL
Clone Library
Wheat cold-stressed seedling cDNA library
Tissue
Seedling
Developmental Stage
Five-day old seedling
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0368_C02_E04ZT Wheat cold-stressed seedling cDNA library Triticum aestivum cDNA clone WHE0368_C02_E04, mRNA sequence.
Strain
lab_host E. coli SOLR
Clone
WHE0368_C02_E04
Probe
WHE0368_C02_E04
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; This EST was generated by sequencing from the 3' end of the clone.; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20.; Seq primer: T7 primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized , germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Five-day old seedlings were transferred to 5 C cold room and kept for 48 hr. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Five-day old seedlings were transferred to 5 C cold room and kept for 48 hr. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA
ttttttttttttttttttttttttgcgctatgacatgtttattaacgatt
gttccaatcgaattacatctatggcattggccgagaacaaagaaaaggaa
gacccttgtcacgtggaaagtttcgtctctaggagaaggccgtcgtcggc
atcttcttatcacccaaaaagtggctgaagagactgagcgcctgcctcgg
cgtgtgcatagggacctcgtgcccggctccgcggatcgtcacgaacgtga
ggccctcgtaggtgatcgtccacccacccacctgcagccggtcgtaccac
ggcgtccactcctggacagtcttgagcccgagcttgttcagggtcagcct
cgtcgccgtcacggggatcctcccatcggtgtcaccgctgaaaacccaga
ccctgattccgccggcgacgagcttgcggatgatgggg

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