GrainGenes Sequence Report: BQ160223

[Submit comment/correction]

Sequence

BQ160223

Contig

NSFT03P2_Contig8581

External Databases

TIGR Gene Index

wEST map position

BQ160223

DB Remark

Locus Source: Secale cereale (rye)

Keyword

EST

Species

Secale cereale

Cultivar

Blanco

Chromosome

4BL

Clone Library

Secale cereale anther cDNA library

Tissue

Anther

Developmental Stage

Adult plant before anthesis

Data Source

genbank	Release 135, Apr 15 2003
genbank	Downloaded 2008-2009

Title

WHE1278_G01_N02ZT Secale cereale anther cDNA library Secale cereale cDNA clone WHE1278_G01_N02, mRNA sequence.

Strain

lab_host E. coli SOLR

Clone

WHE1278_G01_N02

Probe

WHE1278_G01_N02

Remark

DB_xref: taxon:4550

Feature: source: mol_type = 'mRNA';

Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; This EST was generated by sequencing from the 3' end of the clone.; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20.; Seq primer: T7 primer.

Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Anthers were harvested and pooled from early meiosis to late meiosis. The tissue, total RNA, and poly(A) RNA were prepared (Butler, Ross and Gustafson) at University of Missouri, Columbia. A cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).

DNA

tttttttttttttttttttcacacaaaacatgggttgcattttgttgcct
ttttcttggctcatttcatttctgatatacagtaatatacaaacggacac
cactgcttactagtagtactagaagaagacttgaaagatgagacggcggc
agcaggcagagcatggcacaaggcgcaggatttggtcgattcttgaagct
tgacatcccaacctagcgaggctggtggatgaagcgcggtgcgccgccgc
ccctcgggctgccggcgtacttggtgggcttctcggtgtacctaggcttc
tc


GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.