Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Sequence Report: BM140569

[Submit comment/correction]

Sequence	BM140569
Contig	NSFT03P2_Contig12909
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC315746
wEST map position	BM140569
NCBI UniGene	Ta.55775
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001052115.1 Os04g0151800 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Species	Triticum aestivum
Cultivar	Sumai3
Chromosome	1BL 1DL
Clone Library	Wheat Fusarium graminearum infected spike cDNA library
Tissue	Spike
Developmental Stage	Adult plant
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0485_h05_p09zS Wheat Fusarium graminearum infected spike cDNA library Triticum aestivum cDNA clone WHE0485_h05_p09, mRNA sequence.
Strain	lab_host E. coli SOLR
Clone	WHE0485_h05_p09
Probe	WHE0485_h05_p09
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20. No effort was taken; to identify ESTs of fungal origin from this library, thus this EST; could be of wheat or fungal origin.; Seq primer: Strategene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes were sprayed at anthesis with Fusarium graminearum. Total RNA, and poly(A) RNA were prepared and pooled from infected spike at 0, 6, 12, 24, 36 and 48 hours after inoculation, a cDNA library was made , and the cDNA clones were in vivo excised to give pBluescript phagemids in G. Muehlbauer lab at the University of Minnesota (Kruger, W.M., Muehlbauer, G.J., Pritsch, C., Vance, C.). The cDNA library should contain genes of both wheat and fungal pathogen origin. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes were sprayed at anthesis with Fusarium graminearum. Total RNA, and poly(A) RNA were prepared and pooled from infected spike at 0, 6, 12, 24, 36 and 48 hours after inoculation, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in G. Muehlbauer lab at the University of Minnesota (Kruger, W.M., Muehlbauer, G.J., Pritsch, C., Vance, C.). The cDNA library should contain genes of both wheat and fungal pathogen origin. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA	agggaggggccacccccgccggagaagaccgccgcgacggaactcgcatc gccggtaggatggacccgcatgatggagagcctgctgctgacgagttgcc accaccaccccctctgcctcccaacgtggtgcccatcatcgcagaagatg ctgctgctgctagtgagagcgaaccgcccccaccgccacctccaagcaag ccagcaaagcctaggaggcacataatggccaggcctcccaatggcttggg aaagaagggccagcccatccagctgcttgccaaccactacaaagtctctg tcaagccttcagaggagttcttcaaccactactatgttaatctcaagtat gaggatgatacgccagtcgacagcaagggcattggcagaaaggtccttga taagctgcagcacacctaccattctgagctcgcagacaaggactttgcat atgatggcgaaaagagcctctttaccatcggggctcttccacagatcaac aatgaattcattgtggtattggaagacatcggtagtggaaagactgctgc tgggagccctggtggtaataacggtagtcctggaggtggtgaccagaaga gggtgaggag

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.