GrainGenes Sequence Report: BM138635
Sequence
BM138635
Contig
Ta.8584.1.S1_at NSFT03P2_Contig15628
External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC327538
wEST map position
BM138635
NCBI UniGene
Ta.58102
DB Remark
Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001045358.1 Os01g0941200 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Triticum aestivum
Cultivar
Sumai3
Chromosome
3AL 3BL 3DL
Clone Library
Wheat Fusarium graminearum infected spike cDNA library
Tissue
Spike
Developmental Stage
Adult plant
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
WHE0496_A07_A14ZS Wheat Fusarium graminearum infected spike cDNA library Triticum aestivum cDNA clone WHE0496_A07_A14, mRNA sequence.
Strain
lab_host E. coli SOLR
Clone
WHE0496_A07_A14
Probe
WHE0496_A07_A14
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20. No effort was taken; to identify ESTs of fungal origin from this library, thus this EST; could be of wheat or fungal origin.; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes were sprayed at anthesis with Fusarium graminearum. Total RNA, and poly(A) RNA were prepared and pooled from infected spike at 0, 6, 12, 24, 36 and 48 hours after inoculation, a cDNA library was made , and the cDNA clones were in vivo excised to give pBluescript phagemids in G. Muehlbauer lab at the University of Minnesota (Kruger, W.M., Muehlbauer, G.J., Pritsch, C., Vance, C.). The cDNA library should contain genes of both wheat and fungal pathogen origin. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes were sprayed at anthesis with Fusarium graminearum. Total RNA, and poly(A) RNA were prepared and pooled from infected spike at 0, 6, 12, 24, 36 and 48 hours after inoculation, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in G. Muehlbauer lab at the University of Minnesota (Kruger, W.M., Muehlbauer, G.J., Pritsch, C., Vance, C.). The cDNA library should contain genes of both wheat and fungal pathogen origin. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.8584.1.S1_at 922 WHE2AFFY
[ Show all 26 ]
DNA
gggctagctagcagcaatggccaggcaggatgttgcttccatgtttgccg
ttgctctcttcatcggagcattcgtttctgttcctacaagtgtgcaatcc
atcggcgtgtgctacggcgtgatcgccaacaacctcccgccggcgaacga
cgtggtgcagctctacaggtccattggcatcaccggcatgcgcatctact
tcgccgacgccaaggccctctccgcgctccgtaactccggcatcagcctc
atcctcgacgtcggcaacgaccagctcgccagcctcgccgccagcacctc
caacgcggcgtcctgggtgcagaaaaacgtccggccatactacccggccg
tgaacatcaagtacatcgccgccggtaacgaggtccagggaggcgccacc
cagagcatcgtgccggccatgcggaacctcaacgcggctctctccgccgc
tgggctcggcgccatcaaggtgtccacctccatccggttcgacgaggtgg
ccaagtccttcccgccctc
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: BM138635
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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||