GrainGenes Sequence Report: BM137927
Sequence
BM137927
External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC291333
wEST map position
BM137927
NCBI UniGene
Ta.8658
DB Remark
Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001045549.1 Os01g0973600 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Triticum aestivum
Cultivar
Sumai3
Chromosome
3AL 3BL 3DL
Clone Library
Wheat Fusarium graminearum infected spike cDNA library
Tissue
Spike
Developmental Stage
Adult plant
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
WHE473_G09_N17ZS Wheat Fusarium graminearum infected spike cDNA library Triticum aestivum cDNA clone WHE473_G09_N17, mRNA sequence.
Strain
lab_host E. coli SOLR
Clone
WHE473_G09_N17
Probe
WHE473_G09_N17 BM137927-2D
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20. No effort was taken; to identify ESTs of fungal origin from this library, thus this EST; could be of wheat or fungal origin.; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes were sprayed at anthesis with Fusarium graminearum. Total RNA, and poly(A) RNA were prepared and pooled from infected spike at 0, 6, 12, 24, 36 and 48 hours after inoculation, a cDNA library was made , and the cDNA clones were in vivo excised to give pBluescript phagemids in G. Muehlbauer lab at the University of Minnesota (Kruger, W.M., Muehlbauer, G.J., Pritsch, C., Vance, C.). The cDNA library should contain genes of both wheat and fungal pathogen origin. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes were sprayed at anthesis with Fusarium graminearum. Total RNA, and poly(A) RNA were prepared and pooled from infected spike at 0, 6, 12, 24, 36 and 48 hours after inoculation, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in G. Muehlbauer lab at the University of Minnesota (Kruger, W.M., Muehlbauer, G.J., Pritsch, C., Vance, C.). The cDNA library should contain genes of both wheat and fungal pathogen origin. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA
aaaacgagctgctctccatggttcactcgctgctgttctcgatccacgag
acagagctccaggatttcgtaagaggtcaatgtactggcagctgcatccg
tcatctgctcgtgaagctcctgaggtactcgggatacgacgcggccgtct
gcgtgtccaaatggcaggggttcgacaagatacctggaggtgatcatgag
tacattgatgtcataatagacaacgacctgacgggtccagagcgtctgat
catcgacatcgacttcaggagccactttgaaatagccagagcagtcgatc
cttacggcaccctgctggactcgctcccggtggtctatgtcggcaccctt
ccaagactgaagcagttcctgaacgtgatggccgacgcggcgaaatggtc
cctgaagcagaactccatgcccctgccgccctggagatccctgtcctacc
tccaaatgaagtggcactccaagtacgagaggaaaggcctgcactccgag
cagcaagagttccagggcgcatctccgagccacgcgctgtgcttcgggca
tctgaa
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: BM137927
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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||