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GrainGenes Sequence Report: NSFT03P2_Contig667

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Sequence	BM135311
Contig	Ta.8639.1.S1_at NSFT03P2_Contig667
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC343940
wEST map position	BM135311
NCBI UniGene	Ta.8639
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, strongly similar to NP_001067110.1 Os12g0576700 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Species	Triticum aestivum
Cultivar	Sumai3
Chromosome	5BS 5DS
Clone Library	Wheat Fusarium graminearum infected spike cDNA library
Tissue	Spike
Developmental Stage	Adult plant
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0498_E03_J06ZS Wheat Fusarium graminearum infected spike cDNA library Triticum aestivum cDNA clone WHE0498_E03_J06, mRNA sequence.
Strain	lab_host E. coli SOLR
Clone	WHE0498_E03_J06
Probe	WHE0498_E03_J06
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20. No effort was taken; to identify ESTs of fungal origin from this library, thus this EST; could be of wheat or fungal origin.; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes were sprayed at anthesis with Fusarium graminearum. Total RNA, and poly(A) RNA were prepared and pooled from infected spike at 0, 6, 12, 24, 36 and 48 hours after inoculation, a cDNA library was made , and the cDNA clones were in vivo excised to give pBluescript phagemids in G. Muehlbauer lab at the University of Minnesota (Kruger, W.M., Muehlbauer, G.J., Pritsch, C., Vance, C.). The cDNA library should contain genes of both wheat and fungal pathogen origin. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes were sprayed at anthesis with Fusarium graminearum. Total RNA, and poly(A) RNA were prepared and pooled from infected spike at 0, 6, 12, 24, 36 and 48 hours after inoculation, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in G. Muehlbauer lab at the University of Minnesota (Kruger, W.M., Muehlbauer, G.J., Pritsch, C., Vance, C.). The cDNA library should contain genes of both wheat and fungal pathogen origin. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.8639.1.S1_at 1181 WHE2AFFY Ta.7851.1.S1_at 48 WHE2AFFY
DNA	aagcttacctataaattcaccattgagtggaccgttttaaattgtgtgtc tttttcacgagaatatgcatcgtattattcatctcaattcagcattgaaa ctagctatacaatagtactgtcttcagttatctaaggtaactgtactagt actattgtagatgacaatcacctggacaagtggatacgatataaaagaag cagttccttttgttgaatggggtgcgaaaggcgggtctcagtttctttcc ccagccggaacattaacattcaacagaaatagcatgtgcggagcacctgc tcgaactgttggttggcgccatccgggttacattcatactagtttcttga aggatctgtggccagactccaagtatacctacaggcttggccataggtta ccaaatggtacccacatctggagcaagttatataactttaaagcatcacc ttatcctgggcaagattccttgcaacaaattgtcatatttggagatatgg gaaaggcanaggcagatggttctaatgagttcaatgacttccaacctggc tcactgaacactactaaccagatcattaaagacctagaaaacgttgacat ggtgcttcacattggggacatttgctacgccaatggctacttgtctcagt gggat

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